Tools, code, and essays.
Lab tools & calculators
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GoldenGate Calculator — online calculator for DNA assembly
Code
MATLAB
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Plankton Simulator — multiscale biophysical model of structured microbial communities; consumer-resource dynamics, stochastic ecosystem assembly, object-oriented MATLAB
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Biofilmer — MATLAB scripts to quantify fluorescence time-lapse microscopy biofilm images
Python
- MV Resistance: circular genome plots with pyCirclize — WGS analysis and visualisation, circular genome diagrams; scripts runnable via terminal after cloning
Essays
- Prospects for the Development of Cyanobacterial Biofilm Bioreactors
- Human Practices in Synthetic Biology
- Economics Thought in Italy Before WWII
- Ricordi d’Africa: La Seconda Battaglia di El Alamein
Old texts
- Aristotle, Historia Animalium 9.36.20 — translated by D’Arcy Wentworth Thompson, 1910
- ISAAC NEWTON’S GENERAL SCHOLIUM TO THE PRINCIPIA (1713, 1726)
- Historical references on bioelectrochemistry